ML Research Wiki / Benchmarks / Named Entity Recognition (NER) / BC5CDR

BC5CDR

Named Entity Recognition (NER) Benchmark

Performance Over Time

📊 Showing 14 results | 📏 Metric: F1

Top Performing Models

Rank Model Paper F1 Date Code
1 BINDER Optimizing Bi-Encoder for Named Entity Recognition via Contrastive Learning 91.90 2022-08-30 📦 microsoft/binder
2 ConNER Enhancing Label Consistency on Document-level Named Entity Recognition 91.30 2022-10-24 📦 dmis-lab/conner
3 CL-L2 📚 Improving Named Entity Recognition by External Context Retrieving and Cooperative Learning 90.99 2021-05-08 📦 modelscope/adaseq 📦 modelscope/AdaSeq 📦 Alibaba-NLP/CLNER
4 BioLinkBERT (large) 📚 LinkBERT: Pretraining Language Models with Document Links 90.22 2022-03-29 📦 michiyasunaga/LinkBERT
5 ELECTRAMed 📚 ELECTRAMed: a new pre-trained language representation model for biomedical NLP 90.03 2021-04-19 📦 gmpoli/electramed 📦 yangyucheng000/University
6 BLSTM-CNN-Char (SparkNLP) Biomedical Named Entity Recognition at Scale 89.73 2020-11-12 📦 JohnSnowLabs/spark-nlp-workshop
7 Spark NLP Biomedical Named Entity Recognition at Scale 89.73 2020-11-12 📦 JohnSnowLabs/spark-nlp-workshop
8 UniNER-7B UniversalNER: Targeted Distillation from Large Language Models for Open Named Entity Recognition 89.34 2023-08-07 📦 universal-ner/universal-ner 📦 emma1066/retrieval-augmented-it-openner
9 SciBERT (SciVocab) 📚 SciBERT: A Pretrained Language Model for Scientific Text 88.94 2019-03-26 📦 allenai/scibert 📦 charles9n/bert-sklearn 📦 tetsu9923/scireviewgen
10 GoLLIE 📚 GoLLIE: Annotation Guidelines improve Zero-Shot Information-Extraction 88.40 2023-10-05 📦 hitz-zentroa/gollie

All Papers (14)

microsoft/binder
dmis-lab/conner
modelscope/adaseq modelscope/AdaSeq Alibaba-NLP/CLNER
michiyasunaga/LinkBERT
gmpoli/electramed yangyucheng000/University

Biomedical Named Entity Recognition at Scale

2020
BLSTM-CNN-Char (SparkNLP)
JohnSnowLabs/spark-nlp-workshop
JohnSnowLabs/spark-nlp-workshop
universal-ner/universal-ner emma1066/retrieval-augmented-it-openner
allenai/scibert charles9n/bert-sklearn
hitz-zentroa/gollie
allenai/scibert charles9n/bert-sklearn
houking-can/RDANER
ncbi-nlp/BLUE_Benchmark wonjininfo/CollaboNet
bo1929/anelfop