ML Research Wiki / Benchmarks / Relation Extraction / ChemProt

ChemProt

Relation Extraction Benchmark

Performance Over Time

📊 Showing 12 results | 📏 Metric: F1

Top Performing Models

Rank Model Paper F1 Date Code
1 SciBert (Finetune) SciBERT: A Pretrained Language Model for Scientific Text 83.64 2019-03-26 📦 allenai/scibert 📦 charles9n/bert-sklearn 📦 tetsu9923/scireviewgen
2 BioLinkBERT (large) LinkBERT: Pretraining Language Models with Document Links 79.98 2022-03-29 📦 michiyasunaga/LinkBERT
3 SciFive Large SciFive: a text-to-text transformer model for biomedical literature 78.00 2021-05-28 📦 justinphan3110/SciFive
4 KeBioLM Improving Biomedical Pretrained Language Models with Knowledge 77.50 2021-04-21 📦 GanjinZero/KeBioLM
5 BioT5X (base) SciFive: a text-to-text transformer model for biomedical literature 77.40 2021-05-28 📦 justinphan3110/SciFive
6 PubMedBERT uncased Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing 77.24 2020-07-31 📦 bionlu-coling2024/biomed-ner-intent_detection 📦 rohanshad/cmr_transformer
7 BioMegatron BioMegatron: Larger Biomedical Domain Language Model 77.00 2020-10-12 📦 NVIDIA/NeMo
8 BioBERT BioBERT: a pre-trained biomedical language representation model for biomedical text mining 76.46 2019-01-25 📦 dmis-lab/biobert 📦 EmilyAlsentzer/clinicalBERT 📦 naver/biobert-pretrained
9 NCBI_BERT(large) (P) Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets 74.40 2019-06-13 📦 ncbi-nlp/NCBI_BERT 📦 bigscience-workshop/biomedical 📦 ncbi-nlp/BLUE_Benchmark 📦 gmpoli/electramed
10 SciBERT (Base Vocab) 📚 SciBERT: A Pretrained Language Model for Scientific Text 73.70 2019-03-26 📦 allenai/scibert 📦 charles9n/bert-sklearn 📦 tetsu9923/scireviewgen

All Papers (12)

allenai/scibert charles9n/bert-sklearn
michiyasunaga/LinkBERT
justinphan3110/SciFive
GanjinZero/KeBioLM
justinphan3110/SciFive
bionlu-coling2024/biomed-ner-intent_detection rohanshad/cmr_transformer
NVIDIA/NeMo
dmis-lab/biobert EmilyAlsentzer/clinicalBERT
ncbi-nlp/NCBI_BERT bigscience-workshop/biomedical
allenai/scibert charles9n/bert-sklearn
helboukkouri/character-bert IMPLabUniPr/UniParma-at-semeval-2021-task-5
gmpoli/electramed yangyucheng000/University