BC5CDR

BioCreative V CDR corpus

Dataset Information
Modalities
Texts
Languages
English
Introduced
2016
License
Custom
Homepage
Official Website
Contents

Overview

BC5CDR corpus consists of 1500 PubMed articles with 4409 annotated chemicals, 5818 diseases and 3116 chemical-disease interactions.

Source: https://www.ncbi.nlm.nih.gov/research/bionlp/Data/
Image Source: https://arxiv.org/pdf/1805.10586.pdf

Variants: BC5CDR, BC5CDR-disease, BC5CDR-chemical

Associated Benchmarks

This dataset is used in 1 benchmark:

Recent Benchmark Submissions

Task Model Paper Date
Named Entity Recognition (NER) GoLLIE GoLLIE: Annotation Guidelines improve Zero-Shot … 2023-10-05
Named Entity Recognition (NER) UniNER-7B UniversalNER: Targeted Distillation from Large … 2023-08-07
Named Entity Recognition (NER) ConNER Enhancing Label Consistency on Document-level … 2022-10-24
Named Entity Recognition (NER) BINDER Optimizing Bi-Encoder for Named Entity … 2022-08-30
Named Entity Recognition (NER) BioLinkBERT (large) LinkBERT: Pretraining Language Models with … 2022-03-29
Named Entity Recognition (NER) BERT-CRF Focusing on Potential Named Entities … 2021-11-06
Named Entity Recognition (NER) CL-L2 Improving Named Entity Recognition by … 2021-05-08
Named Entity Recognition (NER) ELECTRAMed ELECTRAMed: a new pre-trained language … 2021-04-19
Named Entity Recognition (NER) RDANER A Robust and Domain-Adaptive Approach … 2021-01-02
Named Entity Recognition (NER) Spark NLP Biomedical Named Entity Recognition at … 2020-11-12
Named Entity Recognition (NER) BLSTM-CNN-Char (SparkNLP) Biomedical Named Entity Recognition at … 2020-11-12
Named Entity Recognition (NER) SciBERT (Base Vocab) SciBERT: A Pretrained Language Model … 2019-03-26
Named Entity Recognition (NER) SciBERT (SciVocab) SciBERT: A Pretrained Language Model … 2019-03-26
Named Entity Recognition (NER) CollaboNet CollaboNet: collaboration of deep neural … 2018-09-21

Research Papers

Recent papers with results on this dataset:

External Links: