JNLPBA

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Overview

JNLPBA is a biomedical dataset that comes from the GENIA version 3.02 corpus (Kim et al., 2003). It was created with a controlled search on MEDLINE. From this search 2,000 abstracts were selected and hand annotated according to a small taxonomy of 48 classes based on a chemical classification. 36 terminal classes were used to annotate the GENIA corpus.

Variants: JNLPBA

Associated Benchmarks

This dataset is used in 2 benchmarks:

Recent Benchmark Submissions

Task Model Paper Date
Named Entity Recognition (NER) CompactBioBERT On the Effectiveness of Compact … 2022-09-07
Named Entity Recognition (NER) BioDistilBERT On the Effectiveness of Compact … 2022-09-07
Named Entity Recognition (NER) DistilBioBERT On the Effectiveness of Compact … 2022-09-07
Named Entity Recognition (NER) BioMobileBERT On the Effectiveness of Compact … 2022-09-07
Named Entity Recognition (NER) BINDER Optimizing Bi-Encoder for Named Entity … 2022-08-30
Named Entity Recognition (NER) MINER MINER: Improving Out-of-Vocabulary Named Entity … 2022-04-09
Named Entity Recognition (NER) BioLinkBERT (large) LinkBERT: Pretraining Language Models with … 2022-03-29
Named Entity Recognition (NER) SciFive-Large SciFive: a text-to-text transformer model … 2021-05-28
Named Entity Recognition (NER) KeBioLM Improving Biomedical Pretrained Language Models … 2021-04-21
Named Entity Recognition (NER) Spark NLP Biomedical Named Entity Recognition at … 2020-11-12
Named Entity Recognition (NER) BLSTM-CNN-Char (SparkNLP) Biomedical Named Entity Recognition at … 2020-11-12
Named Entity Recognition (NER) PubMedBERT uncased Domain-Specific Language Model Pretraining for … 2020-07-31
Named Entity Recognition (NER) BioFLAIR BioFLAIR: Pretrained Pooled Contextualized Embeddings … 2019-08-13
Named Entity Recognition (NER) SciBERT (Base Vocab) SciBERT: A Pretrained Language Model … 2019-03-26
Relation Extraction SciBERT (SciVocab) SciBERT: A Pretrained Language Model … 2019-03-26
Named Entity Recognition (NER) BioBERT BioBERT: a pre-trained biomedical language … 2019-01-25

Research Papers

Recent papers with results on this dataset:

External Links: