LINNAEUS is a general-purpose dictionary matching software, capable of processing multiple types of document formats in the biomedical domain (MEDLINE, PMC, BMC, OTMI, text, etc.). It can produce multiple types of output (XML, HTML, tab-separated-value file, or save to a database). It also contains methods for acting as a server (including load balancing across several servers), allowing clients to request matching over a network. A package with files for recognizing and identifying species names is available for LINNAEUS, showing 94% recall and 97% precision compared to LINNAEUS-species-corpus.
Source: LINNAEUS
Variants: LINNAEUS
This dataset is used in 1 benchmark:
| Task | Model | Paper | Date |
|---|---|---|---|
| Named Entity Recognition (NER) | BERN2 | BERN2: an advanced neural biomedical … | 2022-01-06 |
| Named Entity Recognition (NER) | BLSTM-CNN-Char (SparkNLP) | Biomedical Named Entity Recognition at … | 2020-11-12 |
| Named Entity Recognition (NER) | Spark NLP | Biomedical Named Entity Recognition at … | 2020-11-12 |
| Named Entity Recognition (NER) | BioFLAIR | BioFLAIR: Pretrained Pooled Contextualized Embeddings … | 2019-08-13 |
Recent papers with results on this dataset: