PPI

Protein-Protein Interactions (PPI)

Dataset Information
Introduced
2017
License
Homepage

Overview

protein roles—in terms of their cellular functions from
gene ontology—in various protein-protein interaction (PPI) graphs, with each graph corresponding
to a different human tissue [41]. positional gene sets are used, motif gene sets and immunological
signatures as features and gene ontology sets as labels (121 in total), collected from the Molecular
Signatures Database [34]. The average graph contains 2373 nodes, with an average degree of 28.8.

Variants: PPI

Associated Benchmarks

This dataset is used in 2 benchmarks:

Recent Benchmark Submissions

Task Model Paper Date
Node Classification GCN + SAF The Split Matters: Flat Minima … 2023-06-15
Node Classification GAT + PGN The Split Matters: Flat Minima … 2023-06-15
Node Classification PairE Graph Representation Learning Beyond Node … 2022-03-03
Node Classification VQ-GNN (GAT) VQ-GNN: A Universal Framework to … 2021-10-27
Node Classification GCNII* Simple and Deep Graph Convolutional … 2020-07-04
Node Classification GRACE Deep Graph Contrastive Representation Learning 2020-06-07
Node Classification SIGN SIGN: Scalable Inception Graph Neural … 2020-04-23
Node Classification DSGCN Bridging the Gap Between Spectral … 2020-03-26
Node Classification SGAS SGAS: Sequential Greedy Architecture Search 2019-11-30
Link Prediction HGCN Hyperbolic Graph Convolutional Neural Networks 2019-10-28
Node Classification DenseMRGCN-14 DeepGCNs: Making GCNs Go as … 2019-10-15
Node Classification ResMRGCN-28 DeepGCNs: Making GCNs Go as … 2019-10-15
Node Classification GraphSAINT GraphSAINT: Graph Sampling Based Inductive … 2019-07-10
Node Classification GraphStar Graph Star Net for Generalized … 2019-06-21
Node Classification ClusterGCN Cluster-GCN: An Efficient Algorithm for … 2019-05-20
Node Classification Cluster-GCN Cluster-GCN: An Efficient Algorithm for … 2019-05-20
Node Classification GraphNAS GraphNAS: Graph Neural Architecture Search … 2019-04-22
Node Classification LGCN Large-Scale Learnable Graph Convolutional Networks 2018-08-12
Node Classification JK-LSTM Representation Learning on Graphs with … 2018-06-09
Node Classification GaAN GaAN: Gated Attention Networks for … 2018-03-20

Research Papers

Recent papers with results on this dataset: