PROTEINS

Dataset Information
Modalities
Graphs, Biology
Introduced
2005
License
Homepage

Overview

PROTEINS is a dataset of proteins that are classified as enzymes or non-enzymes. Nodes represent the amino acids and two nodes are connected by an edge if they are less than 6 Angstroms apart.

Source: Fast and Deep Graph Neural Networks

Variants: PROTEINS

Associated Benchmarks

This dataset is used in 1 benchmark:

Recent Benchmark Submissions

Task Model Paper Date
Graph Classification FIT-GNN FIT-GNN: Faster Inference Time for … 2024-10-19
Graph Classification R-GIN + PANDA PANDA: Expanded Width-Aware Message Passing … 2024-06-06
Graph Classification GCN + PANDA PANDA: Expanded Width-Aware Message Passing … 2024-06-06
Graph Classification R-GCN + PANDA PANDA: Expanded Width-Aware Message Passing … 2024-06-06
Graph Classification GIN + PANDA PANDA: Expanded Width-Aware Message Passing … 2024-06-06
Graph Classification ESA (Edge set attention, no positional encodings) An end-to-end attention-based approach for … 2024-02-16
Graph Classification G-Tuning Fine-tuning Graph Neural Networks by … 2023-12-21
Graph Classification Graph-JEPA Graph-level Representation Learning with Joint-Embedding … 2023-09-27
Graph Classification UGT Transitivity-Preserving Graph Representation Learning for … 2023-08-18
Graph Classification PIN Weisfeiler and Lehman Go Paths: … 2023-08-13
Graph Classification rLap (unsupervised) Randomized Schur Complement Views for … 2023-06-06
Graph Classification CIN++ CIN++: Enhancing Topological Message Passing 2023-06-06
Graph Classification Local Topological Profile (LTP) Strengthening structural baselines for graph … 2023-05-01
Graph Classification CAN Cell Attention Networks 2022-09-16
Graph Classification TREE-G TREE-G: Decision Trees Contesting Graph … 2022-07-06
Graph Classification Eff.resistance graph kernel 0/1 Deep Neural Networks via … 2022-06-19
Graph Classification GAP-Layer (Rcut) DiffWire: Inductive Graph Rewiring via … 2022-06-15
Graph Classification GAP-Layer (Ncut) DiffWire: Inductive Graph Rewiring via … 2022-06-15
Graph Classification CT-Layer DiffWire: Inductive Graph Rewiring via … 2022-06-15
Graph Classification DiffWire DiffWire: Inductive Graph Rewiring via … 2022-06-15

Research Papers

Recent papers with results on this dataset: