Pubmed

Overview edit

Variants: PubMed-Long Val, PubMed-Long Test, Pubmed: fixed 20 node per class, PubMed Central, PubMed (60%/20%/20% random splits), PubMed (48%/32%/20% fixed splits), keyword_pubmed_dataset, enoriega/keyword_pubmed sentence, Pubmed (weighted evaluation), Pubmed random partition, Pubmed (nonstandard variant), Pubmed (biased evaluation), PubMed 20k RCT, Pubmed Full-supervised, Pubmed, PubMed with Public Split: fixed 20 nodes per class, PubMed (0.1%), PubMed (0.05%), PubMed (0.03%)

Associated Benchmarks

This dataset is used in 6 benchmarks:

• Link Prediction - Metrics: AUC, AP, Accuracy, ACC
• Community Detection - Metrics: ACC, NMI
• Graph Clustering - Metrics: ACC, NMI, ARI, F score
• Text Summarization - Metrics: ROUGE-1, ROUGE-2, ROUGE-L
• Graph Classification - Metrics: Test Accuracy
• Node Classification - Metrics: Accuracy, Training Split, F1, Validation, Accuracy (%), F1-Score, Inference Time (ms)

Recent Benchmark Submissions

Research Papers

Recent papers with results on this dataset:

• FIT-GNN: Faster Inference Time for GNNs Using Coarsening (2024) -
• Scaling Up Summarization: Leveraging Large Language Models for Long Text Extractive Summarization (2024) -
• Mitigating Degree Biases in Message Passing Mechanism by Utilizing Community Structures (2023) -
• Contrastive Deep Nonnegative Matrix Factorization for Community Detection (2023) -
• The Split Matters: Flat Minima Methods for Improving the Performance of GNNs (2023) -
• Clarify Confused Nodes via Separated Learning (2023) -
• NESS: Node Embeddings from Static SubGraphs (2023) -
• GoSum: Extractive Summarization of Long Documents by Reinforcement Learning and Graph Organized discourse state (2022) -
• Toward Unifying Text Segmentation and Long Document Summarization (2022) -
• Adapting Pretrained Text-to-Text Models for Long Text Sequences (2022) -
• GRETEL: Graph Contrastive Topic Enhanced Language Model for Long Document Extractive Summarization (2022) -
• TREE-G: Decision Trees Contesting Graph Neural Networks (2022) -
• DiffWire: Inductive Graph Rewiring via the Lovász Bound (2022) -
• Factorizing Content and Budget Decisions in Abstractive Summarization of Long Documents (2022) -
• HiStruct+: Improving Extractive Text Summarization with Hierarchical Structure Information (2022) -
• Long Document Summarization with Top-down and Bottom-up Inference (2022) -
• Graph Representation Learning Beyond Node and Homophily (2022) -
• An Effective Graph Learning based Approach for Temporal Link Prediction: The First Place of WSDM Cup 2022 (2022) -
• LongT5: Efficient Text-To-Text Transformer for Long Sequences (2021) -
• Understanding over-squashing and bottlenecks on graphs via curvature (2021) -